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Table 2 The most frequently pathogenic and likely pathogenic germline variants (n > 3) in cancer susceptibility genes

From: Germline mutations of homologous recombination genes and clinical outcomes in pancreatic cancer: a multicenter study in Taiwan

Gene

Refseq transcripts

HGVS coding

HGVS protein

ACMG

Degrees

dbSNP

MAF

ClinVar

Patient ID

ATM

NM_000051.4

c.1402_1403del

p.Lys468fs

Pathogenic

PVS1: very strong, PP5: very strong, PM2: supporting

rs587781347

0.000019

Pathogenic

H0432, H11204, H4414, KH0065

ATR

NM_001184.4

c.2320dup

p.Ile774fs

Pathogenic

PVS1: very strong, PP5: strong

rs757500301

0.00018

Pathogenic

H10846, H3731, H0028, H0626, H2933, H4039, H5930, H6833

WRN

NM_000553.6

c.502_503del

p.Lys168fs

Pathogenic

PVS1: very strong, PP5: moderate, PM2: supporting

rs776785728

0.000064

Pathogenic

H0083, H0410, H11216, H11993

  1. MAF minor allele frequency, ACMG American College of Genetics and Genomics, PVS very strong pathogenicity, PP supporting pathogenicity, PM moderate pathogenicity, PS pathogenic strong